Pylake 1.3.0

Pylake v1.3.0 has been released with new features and improvements to existing analyses. Here’s some of the highlights:

Export correlated movies

Movies exported with Pylake can now optionally show a correlated data slice by simply providing a Slice to the export_video() function.

../../_images/export_correlated.gif

Check out the exporting section in ImageStack and Scan tutorial for more information.

More options for plotting images

Now there’s more flexibility with which color channels to plot for images, including shorthand values for the red/green/blue channels and plotting only two colors:

../../_images/plot_channel_options.png

Check out Plotting Images for more information.

Filtering by duration

You can now filter a KymoTrackGroup by track duration (in seconds) rather than number of points. You can do this by passing a minimum_duration to filter_tracks(). For more information see the kymotracking tutorial.