This Python package includes data analysis tools for Bluelake HDF5 data.

The source code repository is located on Github where you can also post any questions, comments or issues that you might have.

User guide

• Installation
  • Installation instructions
  • Anaconda
  • Updating
  • Optional dependencies
  • Conda environments
  • Frequently asked questions
• Tutorial
  • 1. Files and channels
  • 2. FD curves
  • 3. Confocal images
  • 4. Kymographs
  • 5. Correlated stacks
  • 6. Fd Fitting
  • 7. Notebook widgets
  • 8. Kymotracking
  • 9. Force calibration
  • 10. Population Dynamics
• Examples
  • 1. Cellular Structure and Transport
  • 2. DNA/RNA-Protein Interactions
  • 3. Twistable Worm-Like-Chain Fitting
  • 4. RecA Fd Fitting
  • 5. Cas9 kymotracking

Reference docs

• API Reference
  • lumicks.pylake.File
  • lumicks.pylake.channel.Slice
  • lumicks.pylake.fdcurve.FdCurve
  • lumicks.pylake.kymo.Kymo
  • lumicks.pylake.scan.Scan
  • lumicks.pylake.point_scan.PointScan
  • lumicks.pylake.correlated_stack.CorrelatedStack
  • Force calibration
  • FD Fitting
  • Kymotracking
  • Notebook widgets
  • Population Dynamics

Literature

• Force Calibration
• F,d Fitting
• Kymotracker
• References

• Index