lumicks.pylake
v0.10.1
Changelog
User guide
Installation
Tutorial
Examples
Reference docs
API Reference
Literature
Force Calibration
F,d Fitting
Kymotracker
References
lumicks.pylake
Docs
»
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
_
__call__() (Model method)
(PassiveCalibrationModel method)
__getitem__() (CorrelatedStack method)
(File method)
(Kymo method)
(Slice method)
__init__() (BindingDwelltimes method)
(BindingDwelltimesBootstrap method)
(CalibrationResults method)
(CorrelatedStack method)
(FdCurve method)
(FdDistanceRangeSelector method)
(FdFit method)
(FdRangeSelector method)
(File method)
(GaussianMixtureModel method)
(Kymo method)
(KymoLine method)
(Model method)
(PassiveCalibrationModel method)
(PointScan method)
(PowerSpectrum method)
(Scan method)
(Slice method)
A
add_data() (FdFit method)
aic (BindingDwelltimes attribute)
(FdFit attribute)
(GaussianMixtureModel attribute)
aicc (FdFit attribute)
amplitude_distributions (BindingDwelltimesBootstrap attribute)
amplitudes (BindingDwelltimes attribute)
B
bic (BindingDwelltimes attribute)
(FdFit attribute)
(GaussianMixtureModel attribute)
BindingDwelltimes (class in lumicks.pylake.kymotracker.detail.binding_times)
BindingDwelltimesBootstrap (class in lumicks.pylake.kymotracker.detail.binding_times)
bluelake_version (File attribute)
C
calculate_power_spectrum() (in module lumicks.pylake)
calculate_stats() (BindingDwelltimesBootstrap method)
calibration (Slice attribute)
calibration_results() (PassiveCalibrationModel method)
CalibrationResults (class in lumicks.pylake.force_calibration.power_spectrum_calibration)
center_point_um (Kymo attribute)
(PointScan attribute)
(Scan attribute)
CorrelatedStack (class in lumicks.pylake.correlated_stack)
cov (FdFit attribute)
crop_by_distance() (Kymo method)
crop_by_pixels() (CorrelatedStack method)
D
d (FdCurve attribute)
data (Slice attribute)
derivative() (Model method)
description (File attribute)
dirty (FdFit attribute)
distance_offset() (in module lumicks.pylake)
downsampled_by() (Kymo method)
(PowerSpectrum method)
(Slice method)
downsampled_like() (Slice method)
downsampled_over() (Slice method)
downsampled_to() (Slice method)
E
estimate_diffusion_ols() (KymoLine method)
exit_flag (GaussianMixtureModel attribute)
experiment (File attribute)
export_tiff() (CorrelatedStack method)
export_time (File attribute)
export_video_blue() (Scan method)
export_video_green() (Scan method)
export_video_red() (Scan method)
export_video_rgb() (Scan method)
extrapolate() (KymoLine method)
F
f (FdCurve attribute)
FdCurve (class in lumicks.pylake.fdcurve)
fdcurves (FdDistanceRangeSelector attribute)
(FdRangeSelector attribute)
FdDistanceRangeSelector (class in lumicks.pylake)
FdFit (class in lumicks.pylake)
FdRangeSelector (class in lumicks.pylake)
File (class in lumicks.pylake)
filter_lines() (in module lumicks.pylake)
fit() (FdFit method)
fit_power_spectrum() (in module lumicks.pylake)
force_offset() (in module lumicks.pylake)
format_version (File attribute)
freely_jointed_chain() (in module lumicks.pylake)
from_channel() (lumicks.pylake.GaussianMixtureModel class method)
from_data() (lumicks.pylake.correlated_stack.CorrelatedStack class method)
from_dataset() (lumicks.pylake.correlated_stack.CorrelatedStack class method)
(lumicks.pylake.kymo.Kymo class method)
(lumicks.pylake.point_scan.PointScan class method)
(lumicks.pylake.scan.Scan class method)
from_h5py() (lumicks.pylake.File class method)
G
GaussianMixtureModel (class in lumicks.pylake)
guid (File attribute)
H
has_derivative (Model attribute)
has_fluorescence (Kymo attribute)
(PointScan attribute)
(Scan attribute)
has_force (Kymo attribute)
(PointScan attribute)
(Scan attribute)
has_jacobian (FdFit attribute)
(Model attribute)
hist() (GaussianMixtureModel method)
I
in_range() (PowerSpectrum method)
in_rect() (KymoLine method)
interpolate() (KymoLine method)
invert() (Model method)
inverted_freely_jointed_chain() (in module lumicks.pylake)
inverted_marko_siggia_simplified() (in module lumicks.pylake)
inverted_odijk() (in module lumicks.pylake)
inverted_twistable_wlc() (in module lumicks.pylake)
J
jacobian() (Model method)
json (Kymo attribute)
(PointScan attribute)
(Scan attribute)
K
Kymo (class in lumicks.pylake.kymo)
KymoLine (class in lumicks.pylake.kymotracker.kymoline)
L
label() (GaussianMixtureModel method)
lifetime_distributions (BindingDwelltimesBootstrap attribute)
lifetimes (BindingDwelltimes attribute)
line_time_seconds (Kymo attribute)
log_likelihood() (FdFit method)
M
marko_siggia_ewlc_distance() (in module lumicks.pylake)
marko_siggia_ewlc_force() (in module lumicks.pylake)
marko_siggia_simplified() (in module lumicks.pylake)
means (GaussianMixtureModel attribute)
Model (class in lumicks.pylake.fitting.model)
msd() (KymoLine method)
N
n_components (BindingDwelltimesBootstrap attribute)
n_params (FdFit attribute)
n_residuals (FdFit attribute)
n_samples (BindingDwelltimesBootstrap attribute)
num_frames (CorrelatedStack attribute)
O
odijk() (in module lumicks.pylake)
P
parameter_trace() (in module lumicks.pylake)
params (FdFit attribute)
PassiveCalibrationModel (class in lumicks.pylake)
pdf() (GaussianMixtureModel method)
pixelsize_um (Kymo attribute)
(Scan attribute)
plot() (BindingDwelltimes method)
(BindingDwelltimesBootstrap method)
(CalibrationResults method)
(CorrelatedStack method)
(FdFit method)
(GaussianMixtureModel method)
(Model method)
(PowerSpectrum method)
(Slice method)
plot_blue() (Kymo method)
(PointScan method)
(Scan method)
plot_correlated() (CorrelatedStack method)
plot_green() (Kymo method)
(PointScan method)
(Scan method)
plot_msd() (KymoLine method)
plot_red() (Kymo method)
(PointScan method)
(Scan method)
plot_rgb() (Kymo method)
(PointScan method)
(Scan method)
plot_scatter() (FdCurve method)
plot_spectrum_residual() (CalibrationResults method)
plot_with_force() (Kymo method)
plot_with_position_histogram() (Kymo method)
plot_with_time_histogram() (Kymo method)
PointScan (class in lumicks.pylake.point_scan)
PowerSpectrum (class in lumicks.pylake.force_calibration.power_spectrum)
profile_likelihood() (FdFit method)
R
ranges (FdDistanceRangeSelector attribute)
(FdRangeSelector attribute)
raw (CorrelatedStack attribute)
refine_lines_centroid() (in module lumicks.pylake)
refine_lines_gaussian() (in module lumicks.pylake)
S
sample_from_image() (KymoLine method)
sample_rate (Slice attribute)
save_as() (File method)
save_tiff() (Kymo method)
(Scan method)
Scan (class in lumicks.pylake.scan)
scan_width_um (Kymo attribute)
(Scan attribute)
seconds (Slice attribute)
sigma (FdFit attribute)
size_um (Kymo attribute)
(Scan attribute)
Slice (class in lumicks.pylake.channel)
start (CorrelatedStack attribute)
(Slice attribute)
std (GaussianMixtureModel attribute)
stop (CorrelatedStack attribute)
(Slice attribute)
subtract_independent_offset() (Model method)
T
timestamps (CorrelatedStack attribute)
(Kymo attribute)
(Scan attribute)
(Slice attribute)
track_greedy() (in module lumicks.pylake)
track_lines() (in module lumicks.pylake)
twistable_wlc() (in module lumicks.pylake)
U
update_params() (FdFit method)
V
variances (GaussianMixtureModel attribute)
verify_derivative() (Model method)
verify_jacobian() (Model method)
W
weights (GaussianMixtureModel attribute)
with_baseline_corrected_x() (FdCurve method)
with_channels() (FdCurve method)
with_offset() (FdCurve method)
(KymoLine method)
with_spectrum() (PowerSpectrum method)
Read the Docs
v: v0.10.1
Versions
latest
stable
v0.10.1
v0.10.0
v0.9.0
v0.8.2
wit_crop
release_pr
hydrodynamic_docs
faxen
document_hydro_only
calib_bp
binding_dwell_v2
bias
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.