lumicks.pylake.point_scan.PointScan¶
- class PointScan(name, file, start, stop, metadata)¶
A confocal point scan exported from Bluelake
- Parameters
name (str) – point scan name
file (lumicks.pylake.File) – Parent file. Contains the channel data.
start (int) – Start point in the relevant info wave.
stop (int) – End point in the relevant info wave.
json (dict) – Dictionary containing scan-specific metadata.
- classmethod from_dataset(h5py_dset, file)¶
Construct a confocal class from dataset.
- Parameters
h5py_dset (h5py.Dataset) – The original HDF5 dataset containing confocal scan information
file (lumicks.pylake.File) – The parent file. Used to loop up channel data
- plot(channel, axes=None, **kwargs)¶
Show a formatted plot for the requested color channel.
- Parameters
channel ({'red', 'green', 'blue', 'rgb'}) – Color channel to plot.
axes (mpl.axes.Axes or None) – If supplied, the axes instance in which to plot.
**kwargs – Forwarded to
matplotlib.pyplot.plot()ormatplotlib.pyplot.imshow()
- plot_blue(**kwargs)¶
Plot an image of the blue photon channel
Deprecated since version 0.11.1:
plot_blue()is deprecated. Useplot(channel='blue')instead.
- plot_green(**kwargs)¶
Plot an image of the green photon channel
Deprecated since version 0.11.1:
plot_green()is deprecated. Useplot(channel='green')instead.
- plot_red(**kwargs)¶
Plot an image of the red photon channel
Deprecated since version 0.11.1:
plot_red()is deprecated. Useplot(channel='red')instead.
- plot_rgb(**kwargs)¶
Plot an image of all color channels.
Deprecated since version 0.11.1:
plot_rgb()is deprecated. Useplot(channel='rgb')instead.
- property center_point_um¶
Returns a dictionary of the x/y/z center coordinates of the scan (w.r.t. brightfield field of view)
- property pixel_time_seconds¶
Pixel dwell time in seconds