v0.12.1
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Force Calibration
F,d Fitting
Kymotracker
Diffusion constant estimation
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lumicks.pylake
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Index
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Index
_
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A
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C
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D
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E
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F
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G
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I
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K
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M
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O
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P
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R
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S
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T
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V
_
__init__() (ActiveCalibrationModel method)
(CalibrationResults method)
(ColorAdjustment method)
(CorrelatedStack method)
(DwelltimeBootstrap method)
(DwelltimeModel method)
(FdCurve method)
(FdDistanceRangeSelector method)
(FdFit method)
(FdRangeSelector method)
(File method)
(GaussianMixtureModel method)
(Kymo method)
(KymoLine method)
(Model method)
(PassiveCalibrationModel method)
(PointScan method)
(PowerSpectrum method)
(Scan method)
(Slice method)
A
ActiveCalibrationModel (class in lumicks.pylake)
C
calculate_power_spectrum() (in module lumicks.pylake)
calibrate_force() (in module lumicks.pylake)
CalibrationResults (class in lumicks.pylake.force_calibration.power_spectrum_calibration)
ColorAdjustment (class in lumicks.pylake)
CorrelatedStack (class in lumicks.pylake.correlated_stack)
D
distance_offset() (in module lumicks.pylake)
DwelltimeBootstrap (class in lumicks.pylake.population.dwelltime)
DwelltimeModel (class in lumicks.pylake)
E
estimate_diffusion() (KymoLine method)
F
FdCurve (class in lumicks.pylake.fdcurve)
FdDistanceRangeSelector (class in lumicks.pylake)
FdFit (class in lumicks.pylake)
FdRangeSelector (class in lumicks.pylake)
File (class in lumicks.pylake)
filter_lines() (in module lumicks.pylake)
fit_power_spectrum() (in module lumicks.pylake)
force_offset() (in module lumicks.pylake)
freely_jointed_chain() (in module lumicks.pylake)
G
GaussianMixtureModel (class in lumicks.pylake)
I
inverted_freely_jointed_chain() (in module lumicks.pylake)
inverted_marko_siggia_simplified() (in module lumicks.pylake)
inverted_odijk() (in module lumicks.pylake)
inverted_twistable_wlc() (in module lumicks.pylake)
K
Kymo (class in lumicks.pylake.kymo)
KymoLine (class in lumicks.pylake.kymotracker.kymoline)
M
marko_siggia_ewlc_distance() (in module lumicks.pylake)
marko_siggia_ewlc_force() (in module lumicks.pylake)
marko_siggia_simplified() (in module lumicks.pylake)
Model (class in lumicks.pylake.fitting.model)
O
odijk() (in module lumicks.pylake)
P
parameter_trace() (in module lumicks.pylake)
PassiveCalibrationModel (class in lumicks.pylake)
PointScan (class in lumicks.pylake.point_scan)
PowerSpectrum (class in lumicks.pylake.force_calibration.power_spectrum)
R
refine_lines_centroid() (in module lumicks.pylake)
refine_lines_gaussian() (in module lumicks.pylake)
S
Scan (class in lumicks.pylake.scan)
Slice (class in lumicks.pylake.channel)
T
track_greedy() (in module lumicks.pylake)
track_lines() (in module lumicks.pylake)
twistable_wlc() (in module lumicks.pylake)
V
viscosity_of_water() (in module lumicks.pylake)
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